We have created a new mailing list, obo-taxonomy, under the OBO (Open Biomedical Ontologies) umbrella. Our motivation for this new forum is to really open up the discussion surrounding the issues of what should be a proper ontological representation of taxonomy and phylogeny, for example proper semantics of the relationship between taxonomic groups, and between specimens and species. If you care about or have thoughts or opinions on these and related questions, we encourage you to subscribe to this new list.
Taxonomy as ontology: opening up the debate
May 15, 2008
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Development, Ontology, Taxonomy Ontology | Tagged: community, mailing list | 
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Posted by Hilmar
Phenoscape project set up on SourceForge
April 29, 2008We finally set up a Phenoscape project on SourceForge.net. At this moment there isn’t much there in the code repository, but within the next days we’ll deposit some scripts that we had to develop for OBO-format ontology generation (for example, for initiating the TTO from the Catalog of Fishes) and for massaging the tracker messages auto-generated by the OBO term request trackers to be more user-friendly. The source code repository will also be the home for some controlled vocabularies that (only?) we need for our project (such as the one for museum codes).
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Development, Informatics, Source Code | Tagged: project, Software | 
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Posted by Hilmar
